humanHippocampus2024
This is the development version of humanHippocampus2024; to use it, please install the devel version of Bioconductor.
Access to SRT and snRNA-seq data from spatial_HPC project
Bioconductor version: Development (3.21)
This is an ExperimentHub Data package that helps to access the spatially-resolved transcriptomics and single-nucleus RNA sequencing data. The datasets are generated from adjacent tissue sections of the anterior human hippocampus across ten adult neurotypical donors. The datasets are based on [spatial_hpc](https://github.com/LieberInstitute/spatial_hpc) project by Lieber Institute for Brain Development (LIBD) researchers and collaborators.
Author: Christine Hou [aut, cre] (ORCID:
Maintainer: Christine Hou <chris2018hou at gmail.com>
citation("humanHippocampus2024")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("humanHippocampus2024")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("humanHippocampus2024")| humanHippocampus2024 Tutorial | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SequencingData, SpatialData, Tissue |
| Version | 0.99.5 |
| License | Artistic-2.0 |
| Depends | R (>= 4.4) |
| Imports | ExperimentHub, SummarizedExperiment, SpatialExperiment |
| System Requirements | |
| URL | https://github.com/LieberInstitute/spatial_hpc https://christinehou11.github.io/humanHippocampus2024/ |
| Bug Reports | https://support.bioconductor.org/t/humanHippocampus2024 |
See More
| Suggests | testthat (>= 3.0.0), sessioninfo, rmarkdown, knitr, BiocStyle, ExperimentHubData, AnnotationHubData, RefManageR |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | humanHippocampus2024_0.99.5.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/humanHippocampus2024 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/humanHippocampus2024 |
| Package Short Url | https://bioconductor.org/packages/humanHippocampus2024/ |
| Package Downloads Report | Download Stats |