CHANGES IN VERSION 1.3.6 [2024-10-24] ------------------------------------ BUG FIXES o Fix writing scientific notation to imzML output (note: only affected parsing, not precision) CHANGES IN VERSION 1.3.5 [2024-10-16] ------------------------------------ NEW FEATURES o Support for parallel writing with BiocParallel o Added 'BPPARAM' argument to 'writeAnalyze()' o Added 'BPPARAM' argument to 'writeImzML()' SIGNIFICANT USER-VISIBLE CHANGES o Return 'outdata' attribute on 'writeAnalyze()' results with output 'matter' object o Return 'outdata' attribute on 'writeImzML()' results with output 'matter' object CHANGES IN VERSION 1.3.4 [2024-9-7] ------------------------------------ SIGNIFICANT USER-VISIBLE CHANGES o Parse imzML "binary data compression type" tags o Compressed ibd data arrays are now attached as raw byte arrays (_without_ decompression) CHANGES IN VERSION 1.3.3 [2024-8-13] ------------------------------------ SIGNIFICANT USER-VISIBLE CHANGES o Changed default 'mz.type' from "float32" to "float64" CHANGES IN VERSION 1.3.2 [2024-7-31] ------------------------------------ SIGNIFICANT USER-VISIBLE CHANGES o Renaming imzML files when 'asis=TRUE' now signals a warning CHANGES IN VERSION 1.3.1 [2024-6-20] ------------------------------------ BUG FIXES o Update broken unit test to reflect recent changes in 'matter' CHANGES IN VERSION 1.2.1 [2024-5-7] ------------------------------------ SIGNIFICANT USER-VISIBLE CHANGES o Allow multiple options to 'check' in 'parseImzML' BUG FIXES o Check ibd file size against imzML binary data array offsets CHANGES IN VERSION 1.1.6 [2024-4-24] ------------------------------------ BUG FIXES o Non-existent 'extraArrays' produce NULL instead of error CHANGES IN VERSION 1.1.5 [2024-4-8] ------------------------------------ BUG FIXES o Allow root tags in 'ImzMeta' (e.g., if a tag is unknown) CHANGES IN VERSION 1.1.4 [2024-4-7] ------------------------------------ SIGNIFICANT USER-VISIBLE CHANGES o Updated README.md CHANGES IN VERSION 1.1.3 [2024-3-18] ------------------------------------ NEW FEATURES o Made 'writeAnalyze()' an S4 generic o Add optional 'positions' parameter to 'writeAnalyze()' SIGNIFICANT USER-VISIBLE CHANGES o Change 'writeAnalyze()' parameter 'mz' to 'domain' CHANGES IN VERSION 1.1.2 [2024-3-13] ------------------------------------ BUG FIXES o Remove case sensitivity when checking file extensions CHANGES IN VERSION 1.1.1 [2024-2-18] ------------------------------------ BUG FIXES o Fix error when setting 'ImzMeta' elements to NULL CHANGES IN VERSION 0.99.2 [2023-9-13] ------------------------------------ NEW FEATURES o Added support for additional binary data arrays SIGNIFICANT USER-VISIBLE CHANGES o Casefold checksums and UUIDs before comparison CHANGES IN VERSION 0.99.1 [2023-8-29] ------------------------------------ SIGNIFICANT USER-VISIBLE CHANGES o Added package-level 'CardinalIO' help page CHANGES IN VERSION 0.99.0 [2023-8-12] ------------------------------------ SIGNIFICANT USER-VISIBLE CHANGES o Update 'Analyze75' and 'ImzML' classes for Bioconductor o Prepare for Bioconductor submission CHANGES IN VERSION 0.7.0 [2023-8-11] ------------------------------------ NEW FEATURES o Added 'parseAnalyze()' and 'writeAnalyze()' o Support for Analyze 7.5 files CHANGES IN VERSION 0.6.0 [2023-8-11] ------------------------------------ SIGNIFICANT USER-VISIBLE CHANGES o Update vignette to include writing imzML files CHANGES IN VERSION 0.5.0 [2023-8-11] ------------------------------------ NEW FEATURES o New 'writeImzML()' method for 'ImzMeta' o Support for writing the ".ibd" file CHANGES IN VERSION 0.4.0 [2023-8-10] ------------------------------------ NEW FEATURES o New 'ImzMeta' class CHANGES IN VERSION 0.3.0 [2023-8-8] ----------------------------------- NEW FEATURES o Added 'extra' argument to parseImzML() o Added 'ibd' argument to parseImzmL() o Added checking of UUIDs and checksums CHANGES IN VERSION 0.2.0 [2023-8-7] ----------------------------------- NEW FEATURES o Added 'writeImzML()' method CHANGES IN VERSION 0.1.0 [2023-8-2] ----------------------------------- NEW FEATURES o Get parseImzML() working o New 'ImzML' class