To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaggle")
In most cases, you don't need to download the package archive at all.
gaggle
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see gaggle.
Broadcast data between R and Gaggle
Bioconductor version: 3.2
This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.
Author: Paul Shannon <pshannon at systemsbiology.org>
Maintainer: Christopher Bare <cbare at systemsbiology.org>
Citation (from within R,
enter citation("gaggle")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gaggle")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gaggle")
| Gaggle Overview | ||
| Reference Manual |
Details
| biocViews | Annotation, DataImport, GraphAndNetwork, Software, ThirdPartyClient, Visualization |
| Version | 1.38.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (9.5 years) |
| License | GPL version 2 or newer |
| Depends | R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17) |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://gaggle.systemsbiology.net/docs/geese/r/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | gaggle_1.38.0.tar.gz |
| Windows Binary | gaggle_1.38.0.zip |
| Mac OS X 10.6 (Snow Leopard) | gaggle_1.38.0.tgz |
| Mac OS X 10.9 (Mavericks) | gaggle_1.38.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/gaggle/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/gaggle/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
