- Home
- Bioconductor 3.2
- Software Packages
- AffyCompatible
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AffyCompatible")
In most cases, you don't need to download the package archive at all.
AffyCompatible
|
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see AffyCompatible.
Affymetrix GeneChip software compatibility
Bioconductor version: 3.2
This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.
Author: Martin Morgan, Robert Gentleman
Maintainer: Martin Morgan <mtmorgan at fredhutch.org>
Citation (from within R,
enter citation("AffyCompatible")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AffyCompatible")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AffyCompatible")
| Annotation retrieval with NetAffxResource | ||
| Retrieving MAGE and ARR sample attributes | ||
| Reference Manual |
Details
| biocViews | Infrastructure, Microarray, OneChannel, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (8 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.7.0), XML (>= 2.8-1), RCurl (>= 0.8-1), methods |
| Imports | Biostrings |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | IdMappingRetrieval |
| Suggests Me | oneChannelGUI |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | AffyCompatible_1.30.0.tar.gz |
| Windows Binary | AffyCompatible_1.30.0.zip |
| Mac OS X 10.6 (Snow Leopard) | AffyCompatible_1.30.0.tgz |
| Mac OS X 10.9 (Mavericks) | AffyCompatible_1.30.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/AffyCompatible/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/AffyCompatible/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
