TxDb.Hsapiens.UCSC.hg38.knownGene

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see TxDb.Hsapiens.UCSC.hg38.knownGene.

Annotation package for TxDb object(s)

Bioconductor version: 3.19

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Bioconductor Core Team, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg38.knownGene")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TxDb.Hsapiens.UCSC.hg38.knownGene")

For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual	PDF

biocViews	AnnotationData, Genetics, Homo_sapiens, TxDb
Version	3.18.0
License	Artistic-2.0
Depends	GenomicFeatures(>= 1.53.2)
Imports	AnnotationDbi
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	annotation
Imports Me	DNAfusion, OutSplice, epimutacions, gINTomics, musicatk, nearBynding, rGREAT, signifinder, strandCheckR, uncoverappLib, cinaR, driveR
Suggests Me	BSgenome, BUSpaRse, ChIPpeakAnno, DegCre, EpiTxDb, GRaNIE, GenVisR, GenomicDataCommons, GenomicFeatures, GenomicRanges, GenomicScores, NanoMethViz, Organism.dplyr, SARC, SOMNiBUS, Ularcirc, annotatr, bambu, enhancerHomologSearch, gDNAx, geneAttribution, hicVennDiagram, ideal, mosdef, podkat, raer, scmeth, spatzie, wiggleplotr, chipenrich.data, xcoredata
Links To Me

Follow Installation instructions to use this package in your R session.

Source Package	TxDb.Hsapiens.UCSC.hg38.knownGene_3.18.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg38.knownGene/
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