Changes in version 1.25                         

(Bioconductor version 3.11)

Enhancements

  - Allow control of mininum number of events for each step of
    GatingTemplate #298

Bug Fixes

  - Handle a few more edge cases in .improvedMinDensity
  - Added a fix to the density estimate used by gate_tautstring

                       Changes in version 1.23.5                        

(Bioconductor version 3.10)

API Changes

Simple renaming

  - gate_flowClust_1d -> gate_flowclust_1d
  - gate_flowClust_2d -> gate_flowclust_2d
  - tautStringGate -> gate_tautstring
  - templateGen -> gh_generate_template
  - add_pop_init -> gs_add_gating_method_init
  - add_pop -> gs_add_gating_method
  - remove_pop -> gs_remove_gating_method
  - get.helperGates -> gs_get_helpergates
  - toggle.helperGates -> gt_toggle_helpergates
  - delete.helperGates -> gs_delete_helpergates
  - getNodes -> gt_get_nodes
  - getParent -> gt_get_parent
  - getChildren -> gt_get_children
  - getGate -> gt_get_gate
  - gating -> gt_gating
  - registerPlugins -> register_plugins
  - 
Classes and methods no longer exported

  - registerGatingFunction
  - gtMethod
  - gtPopulation
  - polyFunctions
  - ppMethod

Bug Fixes

  - Some minor fixes to gt_toggle_helpergates
  - Fix "positive" argument to gate_mindensity to match doc

                        Changes in version 1.7.1                        

Enhancements

  - New API: add_pop function allows users to apply a single gating
    method to GatingSet without writing the compelete csv template

                       Changes in version 1.3.17                        

Enhancements

  - more robust csv parsing
  - register wrapper function for quadGate.seq
  - parse 'subSample' argument from 'gating_args' column in csv template
    to allow subsampling the data prior to gating.
  - pass ... from quantileGate to quantile function
  - add method for multipleFitlerResult
  - support multi-dimensions in framework by deprecating x,y with
    channels.

Bug Fixes:

  - fix the bug that stop.at argument to gating doesn't recognize
    partial or full path