rawrr
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see rawrr.
Direct Access to Orbitrap Data and Beyond
Bioconductor version: 3.19
This package wraps the functionality of the RawFileReader .NET assembly. Within the R environment, spectra and chromatograms are represented by S3 objects. The package provides basic functions to download and install the required third-party libraries. The package is developed, tested, and used at the Functional Genomics Center Zurich, Switzerland.
Author: Christian Panse [aut, cre] 
, Tobias Kockmann [aut]
Maintainer: Christian Panse <cp at fgcz.ethz.ch>
citation("rawrr")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rawrr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rawrr")| Direct Access to Orbitrap Data and Beyond | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| INSTALL | Text |
Details
| biocViews | Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.1) |
| Imports | grDevices, graphics, stats, utils |
| System Requirements | mono-runtime 4.x or higher (including System.Data library) on Linux/macOS, .Net Framework (>= 4.5.1) on Microsoft Windows. |
| URL | https://github.com/fgcz/rawrr/ |
| Bug Reports | https://github.com/fgcz/rawrr/issues |
See More
| Suggests | BiocStyle(>= 2.5), ExperimentHub, knitr, protViz (>= 0.7), rmarkdown, tartare(>= 1.5), testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MsBackendRawFileReader, rawDiag |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rawrr_1.12.0.tar.gz |
| Windows Binary (x86_64) | rawrr_1.12.0.zip |
| macOS Binary (x86_64) | rawrr_1.12.0.tgz |
| macOS Binary (arm64) | rawrr_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rawrr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rawrr |
| Bioc Package Browser | https://code.bioconductor.org/browse/rawrr/ |
| Package Short Url | https://bioconductor.org/packages/rawrr/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.19 | Source Archive |