pathVar
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see pathVar.
Methods to Find Pathways with Significantly Different Variability
Bioconductor version: 3.19
This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.
Author: Laurence de Torrente, Samuel Zimmerman, Jessica Mar
Maintainer: Samuel Zimmerman <samuel.e.zimmerman at gmail.com>
citation("pathVar")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pathVar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | GeneSetEnrichment, GeneticVariability, Pathways, Software |
| Version | 1.34.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (9 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 3.3.0), methods, ggplot2, gridExtra |
| Imports | EMT, mclust, Matching, data.table, stats, grDevices, graphics, utils |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | pathVar_1.34.0.zip (64-bit only) |
| macOS Binary (x86_64) | pathVar_1.34.0.tgz |
| macOS Binary (arm64) | pathVar_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pathVar |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pathVar |
| Package Short Url | https://bioconductor.org/packages/pathVar/ |
| Package Downloads Report | Download Stats |