gypsum
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see gypsum.
Interface to the gypsum REST API
Bioconductor version: 3.19
Client for the gypsum REST API (https://gypsum.artifactdb.com), a cloud-based file store in the ArtifactDB ecosystem. This package provides functions for uploads, downloads, and various adminstrative and management tasks. Check out the documentation at https://github.com/ArtifactDB/gypsum-worker for more details.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("gypsum")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gypsum")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gypsum")| Hitting the gypsum API | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Software |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.19 (R-4.4) (< 6 months) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | utils, tools, httr2, jsonlite, parallel, filelock |
| System Requirements | |
| URL | https://github.com/ArtifactDB/gypsum-R |
| Bug Reports | https://github.com/ArtifactDB/gypsum-R/issues |
See More
| Suggests | knitr, rmarkdown, testthat, BiocStyle, digest, jsonvalidate, DBI, RSQLite, S4Vectors, methods |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | celldex, scRNAseq |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gypsum_1.0.1.tar.gz |
| Windows Binary (x86_64) | gypsum_1.0.1.zip |
| macOS Binary (x86_64) | gypsum_1.0.1.tgz |
| macOS Binary (arm64) | gypsum_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gypsum |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gypsum |
| Bioc Package Browser | https://code.bioconductor.org/browse/gypsum/ |
| Package Short Url | https://bioconductor.org/packages/gypsum/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.19 | Source Archive |