SANTA

This package is for version 3.19 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SANTA.

Spatial Analysis of Network Associations

Bioconductor version: 3.19

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Author: Alex Cornish [cre, aut]

Maintainer: Alex Cornish <alex.cornish at icr.ac.uk>

Citation (from within R, enter citation("SANTA")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SANTA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Clustering, Network, NetworkEnrichment, Software
Version	2.40.0
In Bioconductor since	BioC 2.12 (R-3.0) (11.5 years)
License	GPL (>= 2)
Depends	R (>= 4.1), igraph
Imports	graphics, Matrix, methods, stats
System Requirements
URL
Bug Reports	https://github.com/alexjcornish/SANTA

Suggests	BiocGenerics, BioNet, formatR, knitr, msm, org.Sc.sgd.db, markdown, rmarkdown, RUnit
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)	SANTA_2.40.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SANTA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SANTA
Bioc Package Browser	https://code.bioconductor.org/browse/SANTA/
Package Short Url	https://bioconductor.org/packages/SANTA/
Package Downloads Report	Download Stats