PICS
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see PICS.
Probabilistic inference of ChIP-seq
Bioconductor version: 3.19
Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.
Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>
Maintainer: Renan Sauteraud <renan.sauteraud at gmail.com>
Citation (from within R, enter
citation("PICS")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PICS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PICS")| The PICS users guide | HTML | R Script |
| Reference Manual |
Details
| biocViews | ChIPseq, Clustering, Sequencing, Software, Visualization |
| Version | 2.48.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (14.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0.0) |
| Imports | utils, stats, graphics, grDevices, methods, IRanges, GenomicRanges, Rsamtools, GenomicAlignments |
| System Requirements | |
| URL | https://github.com/SRenan/PICS |
| Bug Reports | https://github.com/SRenan/PICS/issues |
See More
| Suggests | rtracklayer, parallel, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | PING |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PICS_2.48.0.tar.gz |
| Windows Binary (x86_64) | PICS_2.48.0.zip |
| macOS Binary (x86_64) | PICS_2.48.0.tgz |
| macOS Binary (arm64) | PICS_2.48.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/PICS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PICS |
| Bioc Package Browser | https://code.bioconductor.org/browse/PICS/ |
| Package Short Url | https://bioconductor.org/packages/PICS/ |
| Package Downloads Report | Download Stats |