FISHalyseR
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see FISHalyseR.
FISHalyseR a package for automated FISH quantification
Bioconductor version: 3.19
FISHalyseR provides functionality to process and analyse digital cell culture images, in particular to quantify FISH probes within nuclei. Furthermore, it extract the spatial location of each nucleus as well as each probe enabling spatial co-localisation analysis.
Author: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>
Maintainer: Karesh Arunakirinathan <akaresh88 at gmail.com>, Andreas Heindl <andreas.heindl at icr.ac.uk>
citation("FISHalyseR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FISHalyseR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FISHalyseR")| FISHAlyseR Automated fluorescence in situ hybridisation quantification in R | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellBiology, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
| License | Artistic-2.0 |
| Depends | EBImage, abind |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | FISHalyseR_1.38.0.tar.gz |
| Windows Binary (x86_64) | FISHalyseR_1.38.0.zip (64-bit only) |
| macOS Binary (x86_64) | FISHalyseR_1.38.0.tgz |
| macOS Binary (arm64) | FISHalyseR_1.38.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/FISHalyseR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FISHalyseR |
| Bioc Package Browser | https://code.bioconductor.org/browse/FISHalyseR/ |
| Package Short Url | https://bioconductor.org/packages/FISHalyseR/ |
| Package Downloads Report | Download Stats |