CAMERA
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see CAMERA.
Collection of annotation related methods for mass spectrometry data
Bioconductor version: 3.19
Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments
Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>
citation("CAMERA")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("CAMERA")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CAMERA")| Atom count expectations with compoundQuantiles | ||
| Isotope pattern validation with CAMERA | ||
| Molecule Identification with CAMERA | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ImmunoOncology, MassSpectrometry, Metabolomics, Software |
| Version | 1.60.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (15.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.5.0), methods, Biobase, xcms(>= 1.13.5) |
| Imports | methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph |
| System Requirements | |
| URL | http://msbi.ipb-halle.de/msbi/CAMERA/ |
| Bug Reports | https://github.com/sneumann/CAMERA/issues/new |
See More
| Suggests | faahKO, RUnit, BiocGenerics, multtest |
| Linking To | |
| Enhances | Rmpi, snow |
| Depends On Me | IPO, LOBSTAHS, MAIT, flagme, metaMS, PtH2O2lipids |
| Imports Me | |
| Suggests Me | RMassBank, cliqueMS, msPurity, mtbls2 |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CAMERA_1.60.0.tar.gz |
| Windows Binary (x86_64) | CAMERA_1.60.0.zip |
| macOS Binary (x86_64) | CAMERA_1.60.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/CAMERA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CAMERA |
| Bioc Package Browser | https://code.bioconductor.org/browse/CAMERA/ |
| Package Short Url | https://bioconductor.org/packages/CAMERA/ |
| Package Downloads Report | Download Stats |