ASpli

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ASpli.

Analysis of Alternative Splicing Using RNA-Seq

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASpli")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")

ASpli	PDF	R Script
Reference Manual	PDF
NEWS	Text

Details

biocViews	Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription
Version	2.14.0
In Bioconductor since	BioC 3.4 (R-3.3) (8 years)
License	GPL
Depends	methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi
Imports	GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply, txdbmaker
System Requirements
URL

See More

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Linking To
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Depends On Me
Imports Me	saseR
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ASpli_2.14.0.tar.gz
Windows Binary (x86_64)	ASpli_2.14.0.zip
macOS Binary (x86_64)	ASpli_2.14.0.tgz
macOS Binary (arm64)	ASpli_2.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ASpli
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ASpli
Bioc Package Browser	https://code.bioconductor.org/browse/ASpli/
Package Short Url	https://bioconductor.org/packages/ASpli/
Package Downloads Report	Download Stats