tximportData

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see tximportData.

tximportData

Bioconductor version: 3.18

This package provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. alevin example output is also included. Forr details on version numbers, sample information, and details on calls, see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("tximportData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tximportData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tximportData")

Sample output files for tximport	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, RNASeqData, SequencingData
Version	1.30.0
License	GPL (>= 2)
Depends
Imports
System Requirements
URL

Suggests	knitr, markdown
Linking To
Enhances
Depends On Me
Imports Me	TDbasedUFE
Suggests Me	DESeq2, eds, fishpond, HumanTranscriptomeCompendium, tximeta, tximport, variancePartition
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tximportData_1.30.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/tximportData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tximportData
Package Short Url	https://bioconductor.org/packages/tximportData/
Package Downloads Report	Download Stats