msdata
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see msdata.
Various Mass Spectrometry raw data example files
Bioconductor version: 3.18
Ion Trap positive ionization mode data in mzML file format. Subset from 500-850 m/z and 1190-1310 seconds, incl. MS2 and MS3, intensity threshold 100.000. Extracts from FTICR Apex III, m/z 400-450. Subset of UPLC - Bruker micrOTOFq data, both mzML and mz5. LC-MSMS and MRM files from proteomics experiments. PSI mzIdentML example files for various search engines.
Author: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be> with contriutions from Johannes Rainer
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <laurent.gatto at uclouvain.be>
citation("msdata")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("msdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | ExperimentData, MassSpectrometryData |
| Version | 0.42.0 |
| License | GPL (>= 2) |
| Depends | R (>= 3.5.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | xcms, mzR, MSnbase |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | MsQuality |
| Suggests Me | IPO, MetaboAnnotation, MobilityTransformR, MsBackendSql, MsExperiment, MSnbase, msqrob2, mzR, peakPantheR, PSMatch, QFeatures, RforProteomics, Spectra, TargetDecoy, xcms |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | msdata_0.42.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/msdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/msdata |
| Package Short Url | https://bioconductor.org/packages/msdata/ |
| Package Downloads Report | Download Stats |