SCATEData
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SCATEData.
Data for SCATE (Single-cell ATAC-seq Signal Extraction and Enhancement)
Bioconductor version: 3.18
SCATEData is an ExperimentHub package for SCATE which is a software tool for extracting and enhancing the sparse and discrete Single-cell ATAC-seq Signal.
Author: Zhicheng Ji [aut], Weiqiang Zhou [aut], Wenpin Hou [cre, aut] 
, Hongkai Ji [aut]
Maintainer: Wenpin Hou <wp.hou3 at gmail.com>
citation("SCATEData")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SCATEData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SCATEData")| 1. SCATEData package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub |
| Version | 1.12.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.0), ExperimentHub, GenomicAlignments, GenomicRanges, base |
| Imports | utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/Winnie09/SCATEData/issues |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | SCATE |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SCATEData_1.12.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SCATEData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SCATEData |
| Package Short Url | https://bioconductor.org/packages/SCATEData/ |
| Package Downloads Report | Download Stats |