HarmonizedTCGAData

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see HarmonizedTCGAData.

Processed Harmonized TCGA Data of Five Selected Cancer Types

Bioconductor version: 3.18

This package contains the processed harmonized TCGA data of five cancer types used in "Tianle Ma and Aidong Zhang, Integrate Multi-omic Data Using Affinity Network Fusion (ANF) for Cancer Patient Clustering".

Author: Tianle Ma

Maintainer: Tianle Ma <tianlema at buffalo.edu>

Citation (from within R, enter citation("HarmonizedTCGAData")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HarmonizedTCGAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HarmonizedTCGAData")

Patient Affinity Matrices Derived from Harmonized TCGA Dataset	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CancerData, ExperimentData, ReproducibleResearch
Version	1.24.0
License	GPL-3
Depends	R (>= 3.4.0)
Imports	ExperimentHub
System Requirements
URL

Suggests	AnnotationHub, knitr, rmarkdown, igraph, survival, ANF, stats, testthat
Linking To
Enhances
Depends On Me
Imports Me
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HarmonizedTCGAData_1.24.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/HarmonizedTCGAData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HarmonizedTCGAData
Package Short Url	https://bioconductor.org/packages/HarmonizedTCGAData/
Package Downloads Report	Download Stats