matchBox
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see matchBox.
Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.
Bioconductor version: 3.18
The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.
Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>
Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <agupta52 at jhu.edu>
citation("matchBox")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("matchBox")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("matchBox")
Working with the matchBox package | R Script | |
Reference Manual |
Details
biocViews | Annotation, Microarray, MultipleComparison, Software, Visualization |
Version | 1.44.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.8.0) |
Imports | |
System Requirements | |
URL |
See More
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Depends On Me | |
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Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | matchBox_1.44.0.tar.gz |
Windows Binary | matchBox_1.44.0.zip |
macOS Binary (x86_64) | matchBox_1.44.0.tgz |
macOS Binary (arm64) | matchBox_1.44.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/matchBox |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/matchBox |
Bioc Package Browser | https://code.bioconductor.org/browse/matchBox/ |
Package Short Url | https://bioconductor.org/packages/matchBox/ |
Package Downloads Report | Download Stats |