makecdfenv
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see makecdfenv.
CDF Environment Maker
Bioconductor version: 3.18
This package has two functions. One reads a Affymetrix chip description file (CDF) and creates a hash table environment containing the location/probe set membership mapping. The other creates a package that automatically loads that environment.
Author: Rafael A. Irizarry <rafa at jhu.edu>, Laurent Gautier <laurent at cbs.dtu.dk>, Wolfgang Huber <w.huber at dkfz-heidelberg.de>, Ben Bolstad <bmb at bmbolstad.com>
Maintainer: James W. MacDonald <jmacdon at u.washington.edu>
citation("makecdfenv")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("makecdfenv")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("makecdfenv")
makecdfenv primer | R Script | |
Reference Manual |
Details
biocViews | DataImport, OneChannel, Preprocessing, Software |
Version | 1.78.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
License | GPL (>= 2) |
Depends | R (>= 2.6.0), affyio |
Imports | Biobase, affy, methods, stats, utils, zlibbioc |
System Requirements | |
URL |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | altcdfenvs |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | makecdfenv_1.78.0.tar.gz |
Windows Binary | makecdfenv_1.78.0.zip |
macOS Binary (x86_64) | makecdfenv_1.78.0.tgz |
macOS Binary (arm64) | makecdfenv_1.78.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/makecdfenv |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/makecdfenv |
Bioc Package Browser | https://code.bioconductor.org/browse/makecdfenv/ |
Package Short Url | https://bioconductor.org/packages/makecdfenv/ |
Package Downloads Report | Download Stats |