gaggle
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.18 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gaggle.
Broadcast data between R and Gaggle
Bioconductor version: 3.18
This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.
Author: Paul Shannon <pshannon at systemsbiology.org>
Maintainer: Christopher Bare <cbare at systemsbiology.org>
citation("gaggle")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("gaggle")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gaggle")| Gaggle Overview | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, DataImport, GraphAndNetwork, Software, ThirdPartyClient, Visualization |
| Version | 1.70.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
| License | GPL version 2 or newer |
| Depends | R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17) |
| Imports | |
| System Requirements | |
| URL | http://gaggle.systemsbiology.net/docs/geese/r/ |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | gaggle_1.70.0.tar.gz |
| Windows Binary | gaggle_1.70.0.zip |
| macOS Binary (x86_64) | gaggle_1.70.0.tgz |
| macOS Binary (arm64) | gaggle_1.70.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/gaggle |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gaggle |
| Package Short Url | https://bioconductor.org/packages/gaggle/ |
| Package Downloads Report | Download Stats |