flowGate
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see flowGate.
Interactive Cytometry Gating in R
Bioconductor version: 3.18
flowGate adds an interactive Shiny app to allow manual GUI-based gating of flow cytometry data in R. Using flowGate, you can draw 1D and 2D span/rectangle gates, quadrant gates, and polygon gates on flow cytometry data by interactively drawing the gates on a plot of your data, rather than by specifying gate coordinates. This package is especially geared toward wet-lab cytometerists looking to take advantage of R for cytometry analysis, without necessarily having a lot of R experience.
Author: Andrew Wight [aut, cre], Harvey Cantor [aut, ldr]
Maintainer: Andrew Wight <andrew.wight10 at gmail.com>
citation("flowGate")
):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowGate")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowGate")
flowGate | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataImport, FlowCytometry, ImmunoOncology, Preprocessing, Software, WorkflowStep |
Version | 1.2.0 |
In Bioconductor since | BioC 3.17 (R-4.3) (1 year) |
License | MIT + file LICENSE |
Depends | flowWorkspace(>= 4.0.6), ggcyto(>= 1.16.0), R (>= 4.2) |
Imports | shiny (>= 1.5.0), BiocManager (>= 1.30.10), flowCore(>= 2.0.1), dplyr (>= 1.0.0), ggplot2 (>= 3.3.2), rlang (>= 0.4.7), purrr, tibble, methods |
System Requirements | |
URL |
See More
Suggests | knitr, rmarkdown, stringr, tidyverse, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | flowGate_1.2.0.tar.gz |
Windows Binary | flowGate_1.2.0.zip |
macOS Binary (x86_64) | flowGate_1.2.0.tgz |
macOS Binary (arm64) | flowGate_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/flowGate |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowGate |
Bioc Package Browser | https://code.bioconductor.org/browse/flowGate/ |
Package Short Url | https://bioconductor.org/packages/flowGate/ |
Package Downloads Report | Download Stats |