MiChip

This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see MiChip.

MiChip Parsing and Summarizing Functions

Bioconductor version: 3.18

This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.

Author: Jonathon Blake <blake at embl.de>

Maintainer: Jonathon Blake <blake at embl.de>

Citation (from within R, enter citation("MiChip")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MiChip")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MiChip")

MiChip miRNA Microarray Processing	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray, Preprocessing, Software
Version	1.56.0
In Bioconductor since	BioC 2.5 (R-2.10) (14.5 years)
License	GPL (>= 2)
Depends	R (>= 2.3.0), Biobase
Imports	Biobase
System Requirements
URL

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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MiChip_1.56.0.tar.gz
Windows Binary	MiChip_1.56.0.zip
macOS Binary (x86_64)	MiChip_1.56.0.tgz
macOS Binary (arm64)	MiChip_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MiChip
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MiChip
Bioc Package Browser	https://code.bioconductor.org/browse/MiChip/
Package Short Url	https://bioconductor.org/packages/MiChip/
Package Downloads Report	Download Stats