MSstatsBig
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see MSstatsBig.
MSstats Preprocessing for Larger than Memory Data
Bioconductor version: 3.18
MSstats package provide tools for preprocessing, summarization and differential analysis of mass spectrometry (MS) proteomics data. Recently, some MS protocols enable acquisition of data sets that result in larger than memory quantitative data. MSstats functions are not able to process such data. MSstatsBig package provides additional converter functions that enable processing larger than memory data sets.
Author: Mateusz Staniak [aut, cre], Devon Kohler [aut]
Maintainer: Mateusz Staniak <mtst at mstaniak.pl>
citation("MSstatsBig")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstatsBig")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MSstatsBig")| MSstatsBig Workflow | HTML | R Script |
| Reference Manual |
Details
| biocViews | MassSpectrometry, Proteomics, Software |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.18 (R-4.3) (0.5 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | arrow, DBI, dplyr, MSstats, MSstatsConvert, readr, sparklyr, utils |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MSstatsBig_1.0.1.tar.gz |
| Windows Binary | MSstatsBig_1.0.1.zip |
| macOS Binary (x86_64) | MSstatsBig_1.0.0.tgz |
| macOS Binary (arm64) | MSstatsBig_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MSstatsBig |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MSstatsBig |
| Bioc Package Browser | https://code.bioconductor.org/browse/MSstatsBig/ |
| Package Short Url | https://bioconductor.org/packages/MSstatsBig/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.18 | Source Archive |