MBAmethyl
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see MBAmethyl.
Model-based analysis of DNA methylation data
Bioconductor version: 3.18
This package provides a function for reconstructing DNA methylation values from raw measurements. It iteratively implements the group fused lars to smooth related-by-location methylation values and the constrained least squares to remove probe affinity effect across multiple sequences.
Author: Tao Wang, Mengjie Chen
Maintainer: Tao Wang <tao.wang.tw376 at yale.edu>
citation("MBAmethyl")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MBAmethyl")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBAmethyl")| MBAmethyl Vignette | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNAMethylation, MethylationArray, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.15) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
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| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MBAmethyl_1.36.0.tar.gz |
| Windows Binary | MBAmethyl_1.36.0.zip |
| macOS Binary (x86_64) | MBAmethyl_1.36.0.tgz |
| macOS Binary (arm64) | MBAmethyl_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MBAmethyl |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MBAmethyl |
| Bioc Package Browser | https://code.bioconductor.org/browse/MBAmethyl/ |
| Package Short Url | https://bioconductor.org/packages/MBAmethyl/ |
| Package Downloads Report | Download Stats |