HERON
This package is for version 3.18 of Bioconductor; for the stable, up-to-date release version, see HERON.
Hierarchical Epitope pROtein biNding
Bioconductor version: 3.18
HERON is a software package for analyzing peptide binding array data. In addition to identifying significant binding probes, HERON also provides functions for finding epitopes (string of consecutive peptides within a protein). HERON also calculates significance on the probe, epitope, and protein level by employing meta p-value methods. HERON is designed for obtaining calls on the sample level and calculates fractions of hits for different conditions.
Author: Sean McIlwain [aut, cre] 
, Irene Ong [aut]
Maintainer: Sean McIlwain <sean.mcilwain at wisc.edu>
citation("HERON")):
Installation
To install this package, start R (version "4.3") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HERON")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HERON")| Analyzing High Density Peptide Array Data using HERON | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Coverage, Microarray, Sequencing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (0.5 years) |
| License | GPL (>= 3) |
| Depends | R (>= 4.3.0), SummarizedExperiment(>= 1.1.6), GenomicRanges, IRanges, S4Vectors |
| Imports | matrixStats, stats, data.table, harmonicmeanp, metap, cluster, spdep, Matrix, limma, methods |
| System Requirements | |
| URL | https://github.com/Ong-Research/HERON |
| Bug Reports | https://github.com/Ong-Research/HERON/issues |
See More
| Suggests | knitr, rmarkdown, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HERON_1.0.0.tar.gz |
| Windows Binary | HERON_1.0.0.zip (64-bit only) |
| macOS Binary (x86_64) | HERON_1.0.0.tgz |
| macOS Binary (arm64) | HERON_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/HERON |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HERON |
| Bioc Package Browser | https://code.bioconductor.org/browse/HERON/ |
| Package Short Url | https://bioconductor.org/packages/HERON/ |
| Package Downloads Report | Download Stats |