compEpiTools

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see compEpiTools.

Tools for computational epigenomics

Bioconductor version: 3.14

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Author: Mattia Pelizzola [aut], Kamal Kishore [aut, cre]

Maintainer: Kamal Kishore <kamal.fartiyal84 at gmail.com>

Citation (from within R, enter citation("compEpiTools")):

Installation

To install this package, start R (version "4.1") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("compEpiTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization
Version	1.28.0
In Bioconductor since	BioC 3.0 (R-3.1) (9.5 years)
License	GPL
Depends	R (>= 3.1.1), methods, topGO, GenomicRanges
Imports	AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb
System Requirements
URL

Suggests	BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer
Linking To
Enhances
Depends On Me
Imports Me
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/compEpiTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/compEpiTools
Package Short Url	https://bioconductor.org/packages/compEpiTools/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.14	Source Archive