Changes in version 1.4.0 o Migrated all of the dataset getter functions to the celldex package. o Streamlined the vignette to point to the book at . o Added a restrict= argument to trainSingleR() and SingleR() to easily restrict to a subset of features. o Deprecated the method= argument in SingleR(). o Protect against accidental data.frames in ref= or test= in all functions. Changes in version 1.2.0 o Added support for consolidating labels from multiple references via combineResults(). o Added mappings to standardized Cell Ontology terms in all *Data() functions. o Changed the name of the labels input of plotScoreDistribution() to labels.use for consistency across functions. o Fixed a label from adipocytes to astrocytes in BlueprintEncodeData(). o Removed umlauts from labels (e.g., naive) in NovershternHematopoieticData() to avoid problems with Windows. o Perform PCA before clustering in aggregateReference() for speed and memory efficiency. o Modified genes="all" behavior in trainSingleR() to report DE-based markers for fine-tuning only. Changes in version 1.0.0 o New package SingleR for cell type annotation.