TreeAndLeaf

This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see TreeAndLeaf.

An alternative to dendrogram visualization and insertion of multiple layers of information


Bioconductor version: 3.12

TreeAndLeaf package comes as an alternative to solve problems regarding dendrogram plotting, such as the lack of space when the dendrogram is too large and the need for adding more layers of information. It treats a whole dendrogram as a tree, in which the observations are represented by the leaves.

Author: Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro

Maintainer: Milena A. Cardoso <milenandreuzo at gmail.com>

Citation (from within R, enter citation("TreeAndLeaf")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TreeAndLeaf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeAndLeaf")
TreeAndLeaf: an alternative to dendrogram visualization. HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version 1.2.0
In Bioconductor since BioC 3.11 (R-4.0) (4 years)
License Artistic-2.0
Depends R (>= 4.0)
Imports RedeR, igraph, ape, methods
System Requirements
URL
See More
Suggests knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, RColorBrewer, geneplast
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TreeAndLeaf_1.2.0.tar.gz
Windows Binary TreeAndLeaf_1.2.0.zip
macOS 10.13 (High Sierra) TreeAndLeaf_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TreeAndLeaf
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TreeAndLeaf
Bioc Package Browser https://code.bioconductor.org/browse/TreeAndLeaf/
Package Short Url https://bioconductor.org/packages/TreeAndLeaf/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.12 Source Archive