This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CNPBayes.
Bioconductor version: Release (3.10)
Bayesian hierarchical mixture models for batch effects and copy number.
Author: Stephen Cristiano, Jacob Carey, and Rob Scharpf
Maintainer: Jacob Carey <jcarey15 at jhu.edu>
Citation (from within R,
enter citation("CNPBayes")
):
To install this package, start R (version "3.6") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("CNPBayes")
For older versions of R, please refer to the appropriate Bioconductor release.
Reference Manual |
biocViews | Bayesian, CopyNumberVariation, Software |
Version | 1.16.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (4.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4.0), IRanges, GenomicRanges |
Imports | Rcpp (>= 0.12.1), S4Vectors, matrixStats, RColorBrewer, gtools, combinat, GenomeInfoDb(>= 1.11.6), methods, BiocGenerics, graphics, stats, coda, SummarizedExperiment, mclust, reshape2, ggplot2, magrittr, purrr, tidyr, dplyr, tibble, scales, data.table, RcppArmadillo |
LinkingTo | Rcpp |
Suggests | testthat, knitr, BiocStyle, rmarkdown, BiocCheck, MASS, VanillaICE, tidyverse |
SystemRequirements | |
Enhances | |
URL | https://github.com/scristia/CNPBayes |
BugReports | https://github.com/scristia/CNPBayes/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
Mac OS X 10.11 (El Capitan) | |
Source Repository | git clone https://git.bioconductor.org/packages/CNPBayes |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CNPBayes |
Package Short Url | https://bioconductor.org/packages/CNPBayes/ |
Package Downloads Report | Download Stats |
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