Package: isobar

Title: R package for the analysis and quantitation of isobarically tagged MSMS proteomics data

Description: isobar provides methods for preprocessing, normalization, and 
   report generation for the analysis of proteomics data generated by Mass 
	spectrometers using isobaric peptide tags, such as iTRAQ and TMT. 
  PDF and Excel reports can automatically be generated based on a configuration file.
  Include modules for validating and integrating data focussing on
  post-translational protein modifications (isobar-PTM).

Version: 1.12.1

Authors: Florian P Breitwieser <fbreitwieser@cemm.oeaw.ac.at>, 
   Jacques Colinge <jcolinge@cemm.oeaw.ac.at>, with contributions from
   Xavier Robin <xavier.robin@unige.ch> and Florent Gluck  <florent.gluck@unige.ch>

References: 

Florian P. Breitwieser, André Müller, Loïc Dayon, Thomas Köcher, Alexandre Hainard,
 Peter Pichler, Ursula Schmidt-Erfurth, Giulio Superti-Furga, Jean-Charles Sanchez, Karl
Mechtler, Keiryn L. Bennett, and Jacques Colinge (June 2011). “General statistical
modeling of data from protein relative expression isobaric tags.” In: J Proteome Res
10.6, pp. 2758–2766

Florian P. Breitwieser and Jacques Colinge (Sept. 2013). “Isobar(PTM): a software
tool for the quantitative analysis of post-translationally modified proteins.” eng. 
In: J Proteomics 90, pp. 77–84

Further Documentation:

http://www.ms-isobar.org/isobar.html
http://www.ms-isobar.org/isobar-ptm.html