\name{KeggGeneSets} \alias{KeggGeneSets} \title{ Create a list of gene sets based on KEGG pathways terms } \description{ This function creates a list of gene sets based on KEGG pathways terms. It is species-specific, and returns a list of gene sets, each of which is a character vector of Entrez gene identifiers. } \usage{ KeggGeneSets(species="Dm") } \arguments{ \item{species}{ a single character value specifying the species: "Dm" ("Drosophila_ melanogaster"), "Hs" ("Homo_sapiens"), "Rn" ("Rattus_norvegicus"), "Mm" ("Mus_musculus") or "Ce" ("Caenorhabditis_elegans")) } } \details{ This function relies on the following packages: GSEABase, KEGG.db. } \value{ a list of gene sets, with names as KEGG pathway IDs. Each gene set is a character vector of Entrez gene identifiers. } \author{ Camille Terfve, Xin Wang } \seealso{ \code{\link[HTSanalyzeR:GOGeneSets]{GOGeneSets}} } \examples{ library(org.Dm.eg.db) library(KEGG.db) DM_KEGG<-KeggGeneSets(species = "Dm") }