\name{topDOLITEGenes} \alias{topDOLITEGenes} %- Also NEED an '\alias' for EACH other topic documented here. \title{ Present top DOLITE enrichment test information with genes} \description{ Function to present top DOLITE enichmentInfo of given GeneAnswers instance with genes. } \usage{ topDOLITEGenes(x, catTerm = TRUE, keepID=TRUE, geneSymbol = TRUE, ...) } %- maybe also 'usage' for other objects documented here. \arguments{ \item{x}{ a given GeneAnswers instance with DOLITE test } \item{catTerm}{ logic value to determine whether mapping DOLITE IDs to DOLITE terms } \item{keepID}{ logic, to determine whether keep DOLITE IDs} \item{geneSymbol}{ logic value to determine whether mapping gene Entrez IDs to gene symbols} \item{\dots}{ other parameters to transfer to topCategoryGenes } } \details{ See function topCategoryGenes help for details } \value{ print necessary information on the screen and save into a specified file if request. } \references{ Feng, G., Du, P., Krett, N., Tessel, M., Rosen, S., Kibbe, W.A. and Lin, S.M., 'A collection of bioconductor methods to visualize gene-list annotations', BMC Research Notes 2010, 3:10} \author{ Gang Feng, Pan Du and Simon Lin } \seealso{\code{\link{topCategoryGenes}}} \examples{ ##x is a GeneAnswers instance with DOLITE test \dontrun{topDOLITEGenes(x, geneSymbol=TRUE, orderby='pvalue', top=10, topGenes='ALL', genesOrderBy='pValue', file=TRUE)} } % Add one or more standard keywords, see file 'KEYWORDS' in the % R documentation directory. \keyword{ IO }