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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ontoCAT")
In most cases, you don't need to download the package archive at all.
ontoCAT
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see ontoCAT.
Ontology traversal and search
Bioconductor version: 2.8
The ontoCAT R package provides a simple interface to ontologies described in widely used standard formats, stored locally in the filesystem or accessible online. The full version of ontoCAT R package also supports searching for ontology terms across multiple ontologies and in major ontology repositories, as well as a number of advanced ontology navigation functions: www.ontocat.org/wiki/r
Author: Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris Swertz, Misha Kapushevsky
Maintainer: Natalja Kurbatova <natalja at ebi.ac.uk>
Citation (from within R,
enter citation("ontoCAT")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ontoCAT")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ontoCAT")
| ontoCAT.pdf | ||
| Reference Manual |
Details
| biocViews | Classification, DataRepresentation, Software |
| Version | 1.4.2 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
| License | Apache License 2.0 |
| Depends | rJava, methods |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ontoCAT_1.4.2.tar.gz |
| Windows Binary | ontoCAT_1.4.2.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ontoCAT/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/ontoCAT/ |
| Package Downloads Report | Download Stats |
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