\name{plotVST} \alias{plotVST} %- Also NEED an '\alias' for EACH other topic documented here. \title{ plot the VST (Variance Stabilizing Transform) function } \description{ plot the VST (Variance Stabilizing Transform) function of VST transformed LumiBatch object or parameters of VST function. } \usage{ plotVST(x, transFun = NULL, plotRange = NULL, addLegend = TRUE, ...) } %- maybe also 'usage' for other objects documented here. \arguments{ \item{x}{ a LumiBatch object after lumiT transform, or a matrix or data.frame with VST parameter } \item{transFun}{ a character vector of transformation function (asinh or log2) } \item{plotRange}{ the plot range of untransformed data } \item{addLegend}{ add legend or not } \item{\dots}{ other parameter used by \code{\link[graphics]{plot}} function } } \details{ } \value{ invisibly return the untransformed and transformed values. } \author{ Pan Du } \seealso{ \code{\link{vst}} } \examples{ ## load example data data(example.lumi) ## Do default VST variance stabilizing transform lumi.T <- lumiT(example.lumi, ifPlot=TRUE) ## plot the transform function plotVST(lumi.T) } % Add one or more standard keywords, see file 'KEYWORDS' in the % R documentation directory. \keyword{hplot}