Bioconductor version: 2.6
Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.
Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne
Maintainer: John Marioni <marioni at uchicago.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("snapCGH")
To cite this package in a publication, start R and enter:
citation("snapCGH")
R Script | Segmentation Overview | |
Reference Manual |
biocViews | Microarray, CopyNumberVariants, TwoChannel, Preprocessing |
Depends | limma, DNAcopy, methods |
Imports | aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, multtest, stats, tilingArray, utils |
Suggests | |
System Requirements | |
License | GPL |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | beadarraySNP |
Version | 1.18.0 |
Since | Bioconductor 1.8 (R-2.3) |
Package Source | snapCGH_1.18.0.tar.gz |
Windows Binary | snapCGH_1.18.0.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | snapCGH_1.18.0.tgz |
Package Downloads Report | Download Stats |
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