Bioconductor version: 2.6
This package provides classes for holding and manipulating Illumina methylation data. Based on eSet, it can contain MIAME information, sample information, feature information, and multiple matrices of data. An "intelligent" import function, methylumiR can read the Illumina text files and create a MethyLumiSet. Normalization and quality control features are also included.
Author: Sean Davis and Sven Bilke
Maintainer: Sean Davis <sdavis2 at mail.nih.gov>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("methylumi")
To cite this package in a publication, start R and enter:
citation("methylumi")
R Script | An Introduction to the methylumi package | |
Reference Manual |
biocViews | DNAMethylation, TwoChannel, Preprocessing, QualityControl, CpGIsland |
Depends | R (>= 2.9), Biobase, methods |
Imports | Biobase, graphics, lattice |
Suggests | lattice, limma, xtable |
System Requirements | |
License | GPL-2 |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Version | 1.3.3 |
Since | Bioconductor 2.5 (R-2.10) |
Package Source | methylumi_1.3.3.tar.gz |
Windows Binary | methylumi_1.3.3.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | methylumi_1.3.3.tgz |
Package Downloads Report | Download Stats |
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