affyPara

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

Bioconductor version: 2.6

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>

Maintainer: Markus Schmidberger <schmidberger at rostlab.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affyPara")

To cite this package in a publication, start R and enter:

    citation("affyPara")

Documentation

PDF	R Script	Parallelized affy functions for preprocessing
PDF	R Script	Simulation Study for VSN Add-On Normalization and Subsample Size
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing
Depends	R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1)
Imports
Suggests	affydata
System Requirements
License	GPL-3
URL	http://www.ibe.med.uni-muenchen.de
Depends On Me
Imports Me
Suggests Me
Version	1.8.0
Since	Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source	affyPara_1.8.0.tar.gz
Windows Binary	affyPara_1.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	affyPara_1.8.0.tgz
Package Downloads Report	Download Stats

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