\name{classicCount-class} \docType{class} \alias{classicCount-class} \alias{contTable} \alias{numSigAll} \alias{numSigMembers} \alias{sigAllMembers} \alias{sigMembers<-} \alias{sigMembers} \alias{contTable,classicCount-method} \alias{initialize,classicCount-method} \alias{numSigAll,classicCount-method} \alias{numSigMembers,classicCount-method} \alias{sigAllMembers,classicCount-method} \alias{sigMembers<-,classicCount-method} \alias{sigMembers,classicCount-method} \alias{GOFisherTest,classicCount-method} \title{Class "classicCount"} \description{This class that extends the virtual class "groupStats" by adding a slot representing the significant members. ....} \section{Objects from the Class}{ Objects can be created by calls of the form \code{new("classicCount", testStatistic = "function", name = "character", allMembers = "character", groupMembers = "character", sigMembers = "character")}. } \section{Slots}{ \describe{ \item{\code{significant}:}{Object of class \code{"integer"} ~~ } \item{\code{name}:}{Object of class \code{"character"} ~~ } \item{\code{allMembers}:}{Object of class \code{"character"} ~~ } \item{\code{members}:}{Object of class \code{"character"} ~~ } \item{\code{testStatistic}:}{Object of class \code{"function"} ~~ } } } \section{Extends}{ Class \code{"groupStats"}, directly. } \section{Methods}{ \describe{ \item{contTable}{\code{signature(object = "classicCount")}: ... } \item{initialize}{\code{signature(.Object = "classicCount")}: ... } \item{numSigAll}{\code{signature(object = "classicCount")}: ... } \item{numSigMembers}{\code{signature(object = "classicCount")}: ... } \item{sigAllMembers}{\code{signature(object = "classicCount")}: ... } \item{sigMembers<-}{\code{signature(object = "classicCount")}: ... } \item{sigMembers}{\code{signature(object = "classicCount")}: ... } } } \details{ TODO: Some datails here..... } \author{Adrian Alexa} \seealso{ \code{\link{classicScore-class}}, \code{\link{groupStats-class}}, \code{\link{getSigGroups-methods}} } \examples{ ##---- Should be DIRECTLY executable !! ---- } \keyword{classes}