\name{genbank} \alias{genbank} \title{A function to open the browser to Genbank with the selected gene. } \description{ Given a vector of Genbank accession numbers or NCBI UIDs, the user can either have a browser display a URL showing a Genbank query for those identifiers, or a XMLdoc object with the same data. } \usage{ genbank(...,disp=c("data","browser"), type=c("accession","uid"), pmaddress=.pmfetch("Nucleotide", disp, type)) } \arguments{ \item{...}{Vectorized set of Genbank accession numbers or NCBI UIDs} \item{disp}{Either "Data" or "Browser" (default is data). Data returns a XMLDoc, while Browser will display information in the user's browser.} \item{type}{Denotes whether the arguments are accession numbers or UIDS. Defaults to accession values.} \item{pmaddress}{Specific path to the pubmed pmfetch engine from the NCBI website.} } \details{ A simple function to retrieve Genbank data given a specific ID, either through XML or through a web browser. This function will accept either Genbank accession numbers or NCBI UIDs (defined as a Pubmed ID or a Medline ID) - although the types must not be mixed in a single call. WARNING: The powers that be at NCBI have been known to ban the IP addresses of users who abuse their servers (currently defined as less then 2 seconds between queries). Do NOT put this function in a tight loop or you may find your access revoked. } \value{ If the option "data" is used, an object of type XMLDoc is returned, unless there was an error with the query in which case an object of type try-error is returned. If the option "browser" is used, nothing is returned. } \author{R. Gentleman } \seealso{\code{\link{pubmed}}, \code{\link[XML]{xmlTreeParse}}} \examples{ ## Use UIDs to get data in both browser & data forms if ( interactive() ) { disp <- c("data","browser") } else { disp <- "data" } for (dp in disp) genbank("12345","9997",disp=dp,type="uid") ## Use accession numbers to retrieve browser info if ( interactive() ) genbank("U03397","AF030427",disp="browser") } \keyword{interface }