\name{getSrcBuilt} \alias{getSrcBuilt} \alias{getLLBuilt} \alias{getUGBuilt} \alias{getUCSCBuilt} \alias{getGOBuilt} \alias{getKEGGBuilt} \alias{getYGBuilt} \alias{getHGBuilt} \alias{getRefBuilt4HS} \alias{getRefSeqBuilt} \alias{getEGBuilt} \title{Functions that get the built date or number of the source data used for annotation} \description{ Given a data source name and organism, the built date or number of the annotation source data will be returned. The built date or number is provided by the data source through its web site. } \usage{ getSrcBuilt(src = "LL", organism = "Homo sapiens") getLLBuilt(url = "http://www.ncbi.nlm.nih.gov/LocusLink/statistics.html") getUGBuilt(organism) getUCSCBuilt(organism) getGOBuilt(url = "http://www.godatabase.org/dev/database/archive/latest") getKEGGBuilt(url = "http://www.genome.jp/kegg/docs/relnote.html") getYGBuilt() getHGBuilt() getRefSeqBuilt(organism) getEGBuilt() } \arguments{ \item{src}{A character string for name of the data source. See details for valid names} \item{organism}{A character string for the name of the organism of interests. See details for valid names} \item{url}{A character string for the url from which built information can be obtained} } \details{ \code{getLLBuilt} finds the built data for LocusLink from the statistics page. \code{getUGBuilt} finds the built data for UniGene from the Xx.info file, where Xx is the short organism name (e.g. Hs for human) \code{getUCSCBuilt} finds the built data for the Human Genome Project from the folder for the latest release. \code{getGOBuilt} finds the built data for Gene Ontology from the timestamp for the -ont.xml.gz file. \code{getKEGGBuilt} finds the built data for KEGG from kegg2.html page (Release version and date) \code{YGBuilt} gets built information for Yeast Genome data. Valid data source names include LL - LocusLink, UG - UniGene, UCSC - the Human Genome Project, GO - Gene Ontology, KEGG - KEGG, YG - Yeast Genome. Valid organism name include human, mouse, rat, and yeast at this time. } \value{ All functions return a string for the built information } \references{\url{http://www.ncbi.nlm.nih.gov/LocusLink/statistics.html}, \url{ftp://ftp.ncbi.nih.gov/repository/UniGene}, \url{http://www.godatabase.org/dev/database/archive/latest}, \url{http://www.genome.ad.jp/kegg/kegg2.html}, \url{ftp://ftp.ncbi.nih.gov/refseq/LocusLink/}, \url{http://www.yeastgenome.org}} \author{Jianhua Zhang} \seealso{\code{\link{getSrcUrl}}} \examples{ \dontrun{ # Get built information for LocusLink ll <- getSrcBuilt(src = "LL") ug <- getSrcBuilt(src = "UG", organism = "Homo sapiens") yg <- getYGBuilt() ll ug yg }} \keyword{datasets}