annotate

Annotation for microarrays

Using R enviroments for annotation.

Author R. Gentleman
Maintainer Biocore Team c/o BioC user list

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("annotate")

Documentation

Package Downloads
Basic GO Usage
Annotation Overview
HowTo: use chromosomal information
HowTo: Get HTML Output
HOWTO: Use the online query tools
Using Data Packages
Using the homology package
Using Affymetrix Probe Level Data
Reference Manual
Package source annotate_1.20.1.tar.gz
Windows binary annotate_1.20.1.zip
MacOS X 10.4 (Tiger) binary annotate_1.20.1.tgz
MacOS X 10.5 (Leopard) binary annotate_1.20.1.tgz
Package Downloads Report Downloads Stats

Details

biocViews
Annotation , Pathways , GO , Affymetrix
Depends
R , methods , Biobase , AnnotationDbi , xtable
Imports
methods , AnnotationDbi
Suggests
hgu95av2.db , genefilter , Biostrings , rae230a.db , rae230aprobe , tkWidgets , XML , GO.db , org.Hs.eg.db , org.Mm.eg.db , hom.Hs.inp.db
System Requirements
License Artistic-2.0
URL
Depends On Me
Agi4x44PreProcess , AnnBuilder , Category , GOstats , GSEABase , MLInterfaces , RpsiXML , SAGElyzer , affycoretools , codelink , geneplotter , idiogram , lumi , macat , ontoTools , safe , splicegear
Imports Me
GlobalAncova , PCpheno , genefilter , globaltest , safe
Suggests Me
BiocCaseStudies , GSEAlm , biomaRt , geneplotter , maigesPack , oneChannelGUI , puma , siggenes
Development History Bioconductor Changelog