arrayQualityMetrics

Quality metrics on microarray data sets

This package performs quality metrics on expressionSet, NChannelSet or affyBatch objects containing microarray data, one or two channels. The results are designated to allow the user to rapidly assess the quality of a set of arrays.

Author Audrey Kauffmann, Wolfgang Huber
Maintainer Audrey Kauffmann

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("arrayQualityMetrics")

Vignettes (Documentation)

Package Downloads

arrayQualityMetrics.pdf
Source arrayQualityMetrics_1.6.1.tar.gz
Windows binary arrayQualityMetrics_1.6.1.zip
OS X binary arrayQualityMetrics_1.6.1.tgz

Details

biocViews
Depends R, Biobase, geneplotter, genefilter, vsn, RColorBrewer, affyPLM, simpleaffy, lattice, latticeExtra, grid, beadarray
Suggests CCl4
Imports
SystemRequirements
License LGPL version 2 or newer
URL
dependsOnMe
suggestsMe