CHANGES IN VERSION 1.3.2
------------------------

  - DESeq2 was implemented in TCC for identifying DEGs.
  - EBSeq was removed from TCC.
  - arguments of 'WAD' function were changed.
  - fixed bug in '.testByDeseq' that missing to treat size factors.
  - the strategies for DE analysis of paired two-group dataset were implemented.
  - add the section for describing DE analysis of paired two-group dataset
    into vignette.



CHANGES IN VERSION 1.2.0
------------------------

  - this package was released as a Bioconductor package (previously CRAN).
  - WAD method for identifying DEGs was added.
  - ROKU method for identifying tissue-specific genes was added.
  - 'increment' argument of 'calcNormFactor' function was added.
  - 'replicates' field of TCC class was deleted.



CHANGES IN VERSION 1.1.3
------------------------

  - 'generateSimulationData' function was renamed to 'simulateReadCount'.
  - 'names' field of TCC class was changed to 'gene_id'.
  - 'hypoData' was reduced to a smaller data set.
  - 'hypoData_mg' was created. This is the simulation dataset which consists
    of 1,000 genes and 9 samples.



CHANGES IN VERSION 1.0.0
------------------------

  - 'TCC' class was implemented as a R5 reference class. Wrapper functions
    with functional programming semantics were proviede.