To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GenomeInfoDb")
In most cases, you don't need to download the package archive at all.
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This package is for version 2.14 of Bioconductor; for the stable, up-to-date release version, see GenomeInfoDb.
Bioconductor version: 2.14
The Seqnames package contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.
Author: Sonali Arora, Martin Morgan, Marc Carlson, H. Pages
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("GenomeInfoDb")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GenomeInfoDb")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomeInfoDb")
R Script | GenomeInfoDb :Introduction to GenomeInfoDb | |
GenomeInfoDb: Submitting your organism to GenomeInfoDb | ||
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, DataRepresentation, Genetics, Software |
Version | 1.0.2 |
In Bioconductor since | BioC 2.14 (R-3.1) (2 years) |
License | Artistic-2.0 |
Depends | R (>= 3.1) |
Imports | |
LinkingTo | |
Suggests | BiocGenerics, IRanges, BSgenome, BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Dmelanogaster.UCSC.dm3.ensGene, RUnit, BiocStyle, knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | AnnotationDbi, GenomicRanges, Rsamtools |
Imports Me | GenomicFeatures, SomaticSignatures, VariantTools |
Suggests Me | BSgenome, QDNAseq |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | GenomeInfoDb_1.0.2.tar.gz |
Windows Binary | GenomeInfoDb_1.0.2.zip |
Mac OS X 10.6 (Snow Leopard) | GenomeInfoDb_1.0.2.tgz |
Mac OS X 10.9 (Mavericks) | GenomeInfoDb_1.0.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/GenomeInfoDb/tree/release-2.14 |
Package Short Url | http://bioconductor.org/packages/GenomeInfoDb/ |
Package Downloads Report | Download Stats |
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