This file was created with JabRef 2.0.1. Encoding: Cp1252 @ARTICLE{Bagwell2004, author = {C. Bruce Bagwell}, title = {{DNA} histogram analysis for node-negative breast cancer.}, journal = {Cytometry A}, year = {2004}, volume = {58}, pages = {76--78}, } @ARTICLE{Boguski2003, author = {Mark S Boguski and Martin W McIntosh}, title = {{B}iomedical informatics for proteomics.}, journal = {Nature}, year = {2003}, volume = {422}, pages = {233--237}, } @ARTICLE{Braylan2004, author = {Raul C Braylan}, title = {{I}mpact of flow cytometry on the diagnosis and characterization of lymphomas, chronic lymphoproliferative disorders and plasma cell neoplasias.}, journal = {Cytometry A}, year = {2004}, volume = {58}, pages = {57--61}, } @ARTICLE{Brazma2001, author = {A. Brazma}, title = {{O}n the importance of standardisation in life sciences.}, journal = {Bioinformatics}, year = {2001}, volume = {17}, pages = {113--114}, } @ARTICLE{Carr1987, author = {D.B. Carr and R. Littlefield and W.Nicholson and J.S. Littlefield}, title = {{S}catterplot matrix techniques for large N.}, journal = {Journal of the American Statistical Association}, year = {1987}, volume = {82}, pages = {424--436}, } @ARTICLE{Chicurel2002, author = {M. Chicurel}, title = {{B}ioinformatics: bringing it all together.}, journal = {Nature}, year = {2002}, volume = {419}, pages = {751--755}, } @BOOK{Conover1971, author = {W. J. Conover}, title ={{P}ractical Nonparametric Statistics}, publisher = {John Wiley and Sons.}, year={1971}, address ={New York}, } @ARTICLE{Edwards1989, author = {B.S Edwards and K.K. Altobelli and H.A. Nolla and D.A. Harper and R.R. Hoffman}, title = {{c}omprehensive quality assessment approach for flow cytometric immunophenotyping of human lymphocytes.}, journal = {Cytometry}, year = {1989}, volume = {10}, pages = {433--441}, number = {4}, month = {jul}, } @ARTICLE{Edwards2004, author = {B.S Edwards and T. Oprea and E.R Prossnitz and L.A Sklar}, title = {{F}low cytometry for high-throughput, high-content screening.}, journal = {Curr Opin Chem Biol}, year = {2004}, volume = {8}, pages = {392--398}, number = {4}, month = {Aug}, } @ARTICLE{Gasparetto2004, author = {Maura Gasparetto and Tracy Gentry and Said Sebti and Erica O'Bryan and Ramadevi Nimmanapalli and Michelle A Blaskovich and Kapil Bhalla and David Rizzieri and Perry Haaland and Jack Dunne and Clay Smith}, title = {{I}dentification of compounds that enhance the anti-lymphoma activity of rituximab using flow cytometric high-content screening.}, journal = {J Immunol Methods}, year = {2004}, volume = {292}, pages = {59--71}, } @ARTICLE{Gratama1998, author = {J. W. Gratama and J. L. D'hautcourt and F. Mandy and G. Rothe and D. Barnett and G. Janossy and S. Papa and G. Schmitz and R. Lenkei}, title = {{F}low cytometric quantitation of immunofluorescence intensity: problems and perspectives. {E}uropean {W}orking {G}roup on {C}linical {C}ell {A}nalysis.}, journal = {Cytometry}, year = {1998}, volume = {33}, pages = {166--178}, } @ARTICLE{Grubbs1950, author = {F.E. Grubbs}, year = {1950}, title = {{S}ample Criteria for testing outlying observations.}, journal = {Ann. Math. Stat.}, volume = {21}, number = {1}, pages = {27--58}, } @ARTICLE{Herzenberg2006, author = {L.A. Herzenberg and J. Tung and W.A. Moore, L.A. Herzenberg and D. R. Parks}, title = {{I}nterpreting flow Cytometry data: a guide for the perplexed.}, journal = {Nature Immunology}, year = {2006}, volume = {7}, pages = {681--685}, } @ARTICLE{Keeney2004, author = {M. Keeney and D. Barnett and J. W. Gratama}, title = {{I}mpact of standardization on clinical cell analysis by flow cytometry.}, journal = {J Biol Regul Homeost Agents}, year = {2004}, volume = {18}, pages = {305--312}, } @ARTICLE{Kuckuck2001, author = {F. W. Kuckuck and B. S. Edwards and L. A. Sklar}, title = {{H}igh throughput flow cytometry.}, journal = {Cytometry}, year = {2001}, volume = {44}, pages = {83--90}, } @ARTICLE{LeMeur2006, author = {N. LeMeur and F. Hahne}, title = {{A}nalyzing Flow Cytometry Data with Bioconductor.}, journal = {Rnews}, year = {2006}, volume = {6}, pages = {27--32}, } @ARTICLE{LeMeur2007, author = {N. LeMeur and A. Rossini and M. Gasparetto and C. Smith and R.R. Brinkman and R. Gentleman}, title = {{D}ata Quality Assessment of Ungated Flow Cytometry Data in High Throughput Experiments.}, journal = {Cytometry}, year = {2007}, volume = {Epub ahead of print}, pages = {}, } @BOOK{Parks1997, title = {Data Processing and Analysis: Data Management.}, publisher = {John Wiley \& Sons, Inc}, year = {1997}, editor = {JP Robinson , Z Darkzynkiewicz, PN Dean}, author = {DR Parks}, volume = {1}, series = {Current Protocols in Cytometry}, address = {New York}, } @MANUAL{R2005, title = {R: A Language and Environment for Statistical Computing}, author = {{R Development Core Team}}, organization = {R Foundation for Statistical Computing}, address = {Vienna, Austria}, year = {2005}, } @ARTICLE{Roederer2001b, author = {M. Roederer and R. R. Hardy}, title = {{F}requency difference gating: a multivariate method for identifying subsets that differ between samples.}, journal = {Cytometry}, year = {2001}, volume = {45}, pages = {56--64}, } @ARTICLE{Roederer2001d, author = {M. Roederer and A. Treister and W. Moore and L. A. Herzenberg}, title = {{P}robability binning comparison: a metric for quantitating univariate distribution differences.}, journal = {Cytometry}, year = {2001}, volume = {45}, pages = {37--46}, } @ARTICLE{Spidlen2006, author = {J. Spidlen and R.C. Gentleman and P.D. Haaland and M. Langille and N. Le Meur N and M.F. Ochs and C. Schmitt and C.A. Smith and A.S. Treister and R.R. Brinkman}, title = {{D}ata standards for flow cytometry}, journal = {OMICS}, year = {2006}, volume = {10}, number = {2}, pages = {209--214}, } @article{Spidlen2008, title = {Gating-ML: XML-based Gating Descriptions in Flow Cytometry.}, author = {Spidlen, J. and Leif, R.C. and Moore, W. and Roederer, M. and International Society for the Advancement of Cytometry Data Standards Task Force and Brinkman, R.R.}, journal = {Cytometry A}, volume = {73A}, number = {12}, pages = {1151--1157}, year = {2008} } @ARTICLE{Suni2003, author = {Maria A Suni and Holli S Dunn and Patricia L Orr and Rian de Laat and Elizabeth Sinclair and Smita A Ghanekar and Barry M Bredt and John F Dunne and Vernon C Maino and Holden T Maecker}, title = {{P}erformance of plate-based cytokine flow cytometry with automated data analysis.}, journal = {BMC Immunol}, year = {2003}, volume = {4}, pages = {9}, } @ARTICLE{Swayne2003, author = {D.F. Swayne and D. Temple Lang and A. Buja and D. Cook}, title = {{GG}obi: {E}volving from {XG}obi into an {E}xtenxible {F}ramework for {I}nteractive {D}ata {V}isualization.}, journal = {Journal of Computational Statistics and Data Analysis}, year = {2003}, volume = {43}, pages = {423--444}, } @BOOK{Tukey1977, author = {J. W. Tukey}, title = {{E}xploratory Data Analysis.}, publisher = {Reading}, year = {1977}, editor = {Addison-Wesley}, address ={Mass.}, series = {behavioral Science - Quantitative Methods}, } @ARTICLE{Waller2003, author = {A. Waller and P. Simons and E. R. Prossnitz and B. S. Edwards and L. A. Sklar}, title = {{H}igh throughput screening of {G}-protein coupled receptors via flow cytometry.}, journal = {Comb Chem High Throughput Screen}, year = {2003}, volume = {6}, pages = {389--397}, } @BOOK{Gentleman2005, title = {{B}ioinformatics and Computational Biology Solutions Using R and Bioconductor}, publisher = {Springer}, year = {2005}, editor = {R. Gentleman and V. Carey and W. Huber and R. Irizarry and S. Dudoit}, address ={New York} , series = {Statistics for Biology and Health}, }