To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chopsticks")

In most cases, you don't need to download the package archive at all.

chopsticks

   

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see chopsticks.

The snp.matrix and X.snp.matrix classes

Bioconductor version: 2.12

Implements classes and methods for large-scale SNP association studies

Author: Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: Hin-Tak Leung <htl10 at users.sourceforge.net>

Citation (from within R, enter citation("chopsticks")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chopsticks")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chopsticks")

 

PDF R Script snpMatrix
PDF snpMatrix-4d.pdf
PDF snpMatrix-paper-HumanHeridity2007.pdf
PDF snpStatsBug-vignette.pdf
PDF snpStatsBug_1.3.6_-vignette.pdf
PDF snpStatsBug_1.5.4_-vignette.pdf
PDF   Reference Manual

Details

biocViews GeneticVariability, Microarray, SNP, SNPsAndGeneticVariability, Software
Version 1.24.2
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL-3
Depends R (>= 2.10.0), survival, methods
Imports
LinkingTo
Suggests hexbin
SystemRequirements
Enhances
URL http://outmodedbonsai.sourceforge.net/
Depends On Me ind1KG
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source chopsticks_1.24.2.tar.gz
Windows Binary chopsticks_1.24.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) chopsticks_1.24.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/chopsticks/tree/release-2.12
Package Short Url http://bioconductor.org/packages/chopsticks/
Package Downloads Report Download Stats

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