To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bsseq")

In most cases, you don't need to download the package archive at all.

bsseq

   

This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see bsseq.

Analyze, manage and store bisulfite sequencing data

Bioconductor version: 2.12

Tools for analyzing and visualizing bisulfite sequencing data

Author: Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Citation (from within R, enter citation("bsseq")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("bsseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bsseq")

 

PDF R Script Analyzing WGBS with bsseq
PDF R Script The bsseq user's guide
PDF   Reference Manual
Text   NEWS

Details

biocViews DNAMethylation, Software
Version 0.8.0
In Bioconductor since BioC 2.11 (R-2.15) (3.5 years)
License Artistic-2.0
Depends R (>= 2.15), methods, BiocGenerics, IRanges, GenomicRanges, parallel, matrixStats
Imports scales, stats, graphics, Biobase, locfit
LinkingTo
Suggests RUnit, bsseqData
SystemRequirements
Enhances
URL
Depends On Me bsseqData
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source bsseq_0.8.0.tar.gz
Windows Binary bsseq_0.8.0.zip
Mac OS X 10.6 (Snow Leopard) bsseq_0.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/bsseq/tree/release-2.12
Package Short Url http://bioconductor.org/packages/bsseq/
Package Downloads Report Download Stats

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