Package: LungCancerLines
Exports: LungCancerFastqFiles, LungCancerBamFiles

Package: Mulder2012
Exports: Mulder2012.pipeline, Mulder2012.fig, Mulder2012.PPIPre, Mulder2012.RNAiPre, Mulder2012.BMfitting, Mulder2012.BMfitting.extended, Mulder2012.InferPAN, Mulder2012.ModuleSearchByPvclust, Mulder2012.PPIenrich, Mulder2012.module.visualize, GSEARandomWalkFig, Arora2010.pipeline, Arora2010.fig, Arora2010.BMfitting, Arora2010.InferPAN, Arora2010.ModuleSearchByPvclust, Arora2010.hypergeo, Arora2010.module.visualize, dist.pvclust4PAN, parPvclust4PAN

Package: RNASeqDataSubset
Exports: getBamFileList

Package: RNAinteractMAPK
Exports: MAPK.predict.classification, MAPK.cv.classifier, MAPK.plot.classification, MAPK.smooth.scatter, MAPK.screen.as.array, MAPK.cv.TPS, MAPK.estimate.TPS, MAPK.plot.TPS.single, MAPK.plot.TPS.all, MAPK.plot.heatmap.raster, MAPK.report.gene.lists.paper

Package: cgdv17
Exports: getRVS, getrd, countVariants, variantNames, padToReference
ExportMethods: show, sampleNames, variantGRanges
ExportClasses: raggedVariantSet

Package: davidTiling
Exports: getAttributeField, getAllGO, showDens, GOHyperG, scatterWithHist

Package: dsQTL
Exports: getSNPlocs, SE2ES

Package: encoDnaseI
Exports: juxtaPlot
ExportMethods: initialize, dataVals, getTrkXY, rangeLocs, chromStarts, clipTrk, [, chrnum
ExportClasses: hg18track, chrnum

Package: fabiaData
Exports: fabiaDataVersion, fabiaData

Package: ggtut
Exports: observed17ceu, onePerm17ceu, tr17_1_9, tr17_1_9_perm, hg18tx, getFixedBFL

Package: harbChIP
Exports: chkAllUS, chkMotif4TF, getUpstream, allhex, buildUpstreamSeqs2
ExportMethods: show, keys, seqs, organism, Nmers
ExportClasses: upstreamSeqs

Package: leeBamViews
ExportMethods: tabulateReads, totalReadCounts

Package: pasillaBamSubset
Exports: untreated1_chr4, untreated3_chr4, dm3_chr4

Package: pd.atdschip.tiling
Exports: pd.atdschip.tiling

Package: synapterdata
Exports: getHDMSeFinalPeptide, getMSeFinalPeptide, getMSePep3D, loadMaster, getMaster, getFasta