\name{methylumiGenerics} \alias{combine27k450k} \alias{compare.chips} \alias{controlData} \alias{controlData<-} \alias{cy3} \alias{Cy3.N} \alias{Cy3<-} \alias{cy5} \alias{Cy5.N} \alias{Cy5<-} \alias{designIItoMandU} \alias{designItoMandU} \alias{detection} \alias{detection<-} \alias{diagnostics} \alias{getBarcodes} \alias{getProtocolData} \alias{IDATsToDFs} \alias{IDATtoDF} \alias{intensities.IB} \alias{intensities.M} \alias{intensities.OOB} \alias{intensities.OOB.allelic} \alias{intensities.U} \alias{intensitiesByChannel} \alias{lumiCSV} \alias{lumIDAT} \alias{mergeProbeDesigns} \alias{methylated.N} \alias{methylated.N<-} \alias{methylumi.bgcorr} \alias{methylumi.diagnostics} \alias{methylumiCSV} \alias{NChannelSetToMethyLumiSet} \alias{negctls} \alias{negctls.stderr} \alias{negnorm} \alias{normctls} \alias{plotNAs} \alias{plotNegOob} \alias{probeNAs} \alias{psummary} \alias{pval.detect} \alias{pval.detect<-} \alias{qc.probe.plot} \alias{readMethyLumIDAT} \alias{sampleNAs} \alias{subset27kas450k} \alias{subset450kas27k} \alias{subsetCommonProbes} \alias{total.intensity} \alias{unmethylated.N} \alias{unmethylated.N<-} \title{ Generics defined in methylumi } \description{ See the individual classes for details of methods. } \author{ Sean Davis, Pan Du, and Tim Triche, Jr. }